Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1398858 chr1:227349667 A/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs139996114 chr20:29524143 C/T 2.49E-13 118 38.23 50.1 6 KM Plot
THYM rs140179860 chr8:39933232 C/T 0.000101 118 38.83 54.18 28.43 KM Plot
THYM rs140417831 chr11:125574270 C/T 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs1404607 chr2:30762431 T/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs140504095 chr19:43353777 G/T 0.000134 118 44.38 26 28.43 KM Plot
THYM rs140681619 chr4:76315601 T/C 0.000135 116 38.58 42.9 60.13 KM Plot
THYM rs140701567 chr12:86980752 T/A 0 119 38.13 59.63 4.13 KM Plot
THYM rs140723689 chr6:3261463 T/TTG 0 115 4.13 42.25 40.87 KM Plot
THYM rs141069329 chr11:125578548 C/CA 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs141091757 chr9:97106382 G/C 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs141535565 chr4:76413471 CTTGTCAATCATGTCTT/C 3.12E-6 117 38.83 42.9 60.13 KM Plot
THYM rs141613846 chr9:97117526 C/T 8.87E-5 118 41.77 45.87 17.03 KM Plot
THYM rs141911242 chr9:97222779 C/CTGAG 8.42E-5 119 40.67 46.07 17.03 KM Plot
THYM rs141983978 chr2:30862339 ATTTATT/A 1.38E-8 119 36.03 50.13 33.13 KM Plot